ncbi refseq Search Results


reference sequence (refseq) database  (Biotechnology Information)
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Biotechnology Information reference sequence (refseq) database
Reference Sequence (Refseq) Database, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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refseq assembly  (Biotechnology Information)
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Biotechnology Information refseq assembly
Refseq Assembly, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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ncbi refseq plasmid database  (Biotechnology Information)
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Biotechnology Information ncbi refseq plasmid database
Ncbi Refseq Plasmid Database, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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ncbi mouse refseq protein database (released on 04 07 2013, 27 414 entries)  (Matrix Science)
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Matrix Science ncbi mouse refseq protein database (released on 04 07 2013, 27 414 entries)
Ncbi Mouse Refseq Protein Database (Released On 04 07 2013, 27 414 Entries), supplied by Matrix Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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ncbi refseq transcripts  (Biotechnology Information)
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Biotechnology Information ncbi refseq transcripts
Ncbi Refseq Transcripts, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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ncbi refseq annotation release 109.20191205  (Biotechnology Information)
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Biotechnology Information ncbi refseq annotation release 109.20191205
Ncbi Refseq Annotation Release 109.20191205, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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ncbi refseq gene  (Biotechnology Information)
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Biotechnology Information ncbi refseq gene
Ncbi Refseq Gene, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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ncbi refseq identifier  (Biotechnology Information)
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Biotechnology Information ncbi refseq identifier
Ncbi Refseq Identifier, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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viral genomes refseq database  (Biotechnology Information)
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Biotechnology Information viral genomes refseq database
EBV identification using fastv. The EBV genome has a large repetitive region between 12 kb and 35 kb. The coverage result generated by fastv (A) shows even coverage of this region and is similar to the IGV visualization of the BWA alignment result (B). The data used in this experiment was whole genome sequencing of an EBV-positive sample, downloaded from <t>NCBI</t> Sequence Read Archive (SRA accession: ERR1293949).
Viral Genomes Refseq Database, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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ncbi refseq genome annotation  (DOE Systems Biology Knowledgebase)
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DOE Systems Biology Knowledgebase ncbi refseq genome annotation
Overall process of the model reconstruction, refinement, and subsequent analysis/validation. Kbase, <t>NCBI</t> <t>RefSeq,</t> and ModelSEED database were used to reconstruct the initial model. After standard model curations, a high-quality GSM was ready to use. Later, condition-specific transcriptomics data were incorporated with GSM through E-flux algorithm, which resulted in five contextualized models. These models were used to find metabolic bottlenecks and persistence mechanism. K-mean clustering algorithm applied on the transcriptomics data revealed a global stress response mechanism. Thermodynamics and enzyme cost analysis, along with in vitro experimentation, reveal the regulatory role of pgm in CTL persistence.
Ncbi Refseq Genome Annotation, supplied by DOE Systems Biology Knowledgebase, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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browser gc ncbi chrom/plasmid content refseq  (Chrom Tech)
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Chrom Tech browser gc ncbi chrom/plasmid content refseq
Overall process of the model reconstruction, refinement, and subsequent analysis/validation. Kbase, <t>NCBI</t> <t>RefSeq,</t> and ModelSEED database were used to reconstruct the initial model. After standard model curations, a high-quality GSM was ready to use. Later, condition-specific transcriptomics data were incorporated with GSM through E-flux algorithm, which resulted in five contextualized models. These models were used to find metabolic bottlenecks and persistence mechanism. K-mean clustering algorithm applied on the transcriptomics data revealed a global stress response mechanism. Thermodynamics and enzyme cost analysis, along with in vitro experimentation, reveal the regulatory role of pgm in CTL persistence.
Browser Gc Ncbi Chrom/Plasmid Content Refseq, supplied by Chrom Tech, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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ncbi refseq identifiers  (Biotechnology Information)
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Biotechnology Information ncbi refseq identifiers
Overall process of the model reconstruction, refinement, and subsequent analysis/validation. Kbase, <t>NCBI</t> <t>RefSeq,</t> and ModelSEED database were used to reconstruct the initial model. After standard model curations, a high-quality GSM was ready to use. Later, condition-specific transcriptomics data were incorporated with GSM through E-flux algorithm, which resulted in five contextualized models. These models were used to find metabolic bottlenecks and persistence mechanism. K-mean clustering algorithm applied on the transcriptomics data revealed a global stress response mechanism. Thermodynamics and enzyme cost analysis, along with in vitro experimentation, reveal the regulatory role of pgm in CTL persistence.
Ncbi Refseq Identifiers, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


EBV identification using fastv. The EBV genome has a large repetitive region between 12 kb and 35 kb. The coverage result generated by fastv (A) shows even coverage of this region and is similar to the IGV visualization of the BWA alignment result (B). The data used in this experiment was whole genome sequencing of an EBV-positive sample, downloaded from NCBI Sequence Read Archive (SRA accession: ERR1293949).

Journal: Briefings in Bioinformatics

Article Title: A computational toolset for rapid identification of SARS-CoV-2, other viruses and microorganisms from sequencing data

doi: 10.1093/bib/bbaa231

Figure Lengend Snippet: EBV identification using fastv. The EBV genome has a large repetitive region between 12 kb and 35 kb. The coverage result generated by fastv (A) shows even coverage of this region and is similar to the IGV visualization of the BWA alignment result (B). The data used in this experiment was whole genome sequencing of an EBV-positive sample, downloaded from NCBI Sequence Read Archive (SRA accession: ERR1293949).

Article Snippet: The first dataset is the National Center for Biotechnology Information (NCBI) viral genomes RefSeq database [ ], which can be found at https://ftp.ncbi.nlm.nih.gov/refseq/release/viral/ .

Techniques: Generated, Sequencing

Overall process of the model reconstruction, refinement, and subsequent analysis/validation. Kbase, NCBI RefSeq, and ModelSEED database were used to reconstruct the initial model. After standard model curations, a high-quality GSM was ready to use. Later, condition-specific transcriptomics data were incorporated with GSM through E-flux algorithm, which resulted in five contextualized models. These models were used to find metabolic bottlenecks and persistence mechanism. K-mean clustering algorithm applied on the transcriptomics data revealed a global stress response mechanism. Thermodynamics and enzyme cost analysis, along with in vitro experimentation, reveal the regulatory role of pgm in CTL persistence.

Journal: mSystems

Article Title: Metabolic model guided CRISPRi identifies a central role for phosphoglycerate mutase in Chlamydia trachomatis persistence

doi: 10.1128/msystems.00717-24

Figure Lengend Snippet: Overall process of the model reconstruction, refinement, and subsequent analysis/validation. Kbase, NCBI RefSeq, and ModelSEED database were used to reconstruct the initial model. After standard model curations, a high-quality GSM was ready to use. Later, condition-specific transcriptomics data were incorporated with GSM through E-flux algorithm, which resulted in five contextualized models. These models were used to find metabolic bottlenecks and persistence mechanism. K-mean clustering algorithm applied on the transcriptomics data revealed a global stress response mechanism. Thermodynamics and enzyme cost analysis, along with in vitro experimentation, reveal the regulatory role of pgm in CTL persistence.

Article Snippet: To analyze the metabolism of CTL in different stress conditions, we reconstructed a GSM of CTL using the NCBI RefSeq genome annotation (KBase Genome ID: GCF_000068585.1) from KBase ( ).

Techniques: Biomarker Discovery, In Vitro